PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_004290
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family C3H
Protein Properties Length: 357aa    MW: 38399.2 Da    PI: 7.0207
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_004290genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.33.5e-1096120126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt+lC+ f++ GtC+y  +C+FaH+
  DCAR_004290  96 FKTKLCCKFRA-GTCPYVTNCNFAHS 120
                  69*********.*************8 PP

2zf-CCCH17.95.5e-06173194526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                   C+ f+    C+yG++C+F H+
  DCAR_004290 173 HCKKFFTEEGCPYGENCSFLHD 194
                  599999999************7 PP

3zf-CCCH43.17e-14238263126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +kt++C+ + +tG+C++G++C+FaHg
  DCAR_004290 238 WKTRICNKWEQTGFCPFGNKCHFAHG 263
                  8************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-1493128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-893126IPR000571Zinc finger, CCCH-type
SMARTSM003560.00395121IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.13195122IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-796120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375168196IPR000571Zinc finger, CCCH-type
SMARTSM003560.52168195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.1E-8169195IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-6169195IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-17233267IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-10234268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.403237265IPR000571Zinc finger, CCCH-type
SMARTSM003568.9E-9237264IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-11238263IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MDYGRDSSGD VVHIIPGNHG SGGGNWGSGS TDQAVWATEE DYGAWNREAS VDGNSNLDGR  60
QSQTRSGSEP PNKKSRILQP DVQSTNRSKA IGKMFFKTKL CCKFRAGTCP YVTNCNFAHS  120
IEELRRPPPN WQEIVAAHEE EQTANEPREE FQIPTLGSTA FPVEPQRSSK GRHCKKFFTE  180
EGCPYGENCS FLHDDQSRTR ESVAISLGPG SGGGYGGSAN AGAGSGGVSP STLKPSNWKT  240
RICNKWEQTG FCPFGNKCHF AHGAAELHRY GGGLVDSDGK EFSSPSDTKQ GTGLSKSPGD  300
TLVASVPSVP YADGYHMGGS SQRVSNMPRA GPILNQKWKG PNKISLIYGD WIEDLE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096556.11e-159Zinc finger CCCH domain-containing protein 56
SwissprotQ9LQM31e-122C3H12_ARATH; Zinc finger CCCH domain-containing protein 12
TrEMBLU5U2G41e-161U5U2G4_9ASTR; Putative zinc finger CCCH domain-containing protein 56 (Fragment)
STRINGVIT_02s0012g01550.t011e-144(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-118C3H family protein